Meet RxnIP

RxnIP is an integrative platform to store, search, annotate, generalize and apply biochemical reactions.

There are mainly six parts contained in RxnIP.

(1) RxnDB: public reaction port of biosynthesis reactions.

(2) RxnFinder: biochemical reaction search engines.

(3) Rxn2Bio: automatically bridging the biosynthesis gap between biosynthesis reaction and catalytic enzyme using reaction similarity and reaction diversity.

(4) RxnPatter: A Web Server for Extracting Chemical Transformation Patterns from Biochemical Reactions.

(5) ModMet3D: pseudo 3D metabolic networks.

(6) BioSynther: information-guided biosynthesis pathway design.

DIM (Data, Informatics, Modeling) Levels of RxnIP

Data Level:

RxnDB: Reaction Database.
RxnPattern: Chemical Transformation Patterns of Biochemical Reactions.
3D-Ecoli (Google Chrome Web Browser Needed!!!): Pseudo 3D E. coli Metabolic Network.

Informatics Level:

RxnFinder: Reaction Database Search Engines.
RxnPatter: A Web Server for Extracting Chemical Transformation Patterns from Biochemical Reactions.

Modeling Level:

ECAssigner: Assignment of EC Numbers to Enzymatic Reactions with Reaction Difference Fingerprints.
Rxn2Bio: Automatically Bridging the Biosynthesis Gap between Biosynthesis Reactions and Catalytic Enzymes Using Reaction Similarity and Reaction Diversity.

Application Level:

BioSynther: Information-guided Biosynthesis Pathway Design.

Tools:

Tools Developed in RxnIP.
(1) Molecule Input; (2) Reaction Input; (3) Molecular Fragmentation; (4) Reaction Difference Fingerprints; (5) Reaction Distance; (6) Convert Formats(Beta); (7) Smiles to Image.